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Table 1 Six pairs of primers used for SNP identification in pig NR1H3

From: The association of NR1H3 gene with lipid deposition in the pig

Name

Sequences (5′ to 3′)

Amplicon region

Amplicon size (bp)

annealing temperature

NR1H3-1

F: TCCCACTCTGAGGTTCTTTTT

Exon 1

235

58 °C

R: CTTACGGACCTGACACTGGA

NR1H3-2

F:GCCAGGAAAGCCTTAGCACA

Exon 2

361

60 °C

R: AGGAGGCAAGCAACAGCAAG

NR1H3-3

F:CTGAGACCCCCCCTGTGC

Exon 3

259

59 °C

R: GCCCCTACCTCCTCCAAATC

NR1H3-4

F: GAACATTAAGCCTCTTCCAT

Exon 4

347

54 °C

R: TTCCCTCTTTCCTATCAGC

NR1H3-5

F: ATCTCTTCCTTGTCTTTACCC

Exon 5, exon 6 and exon 7

889

56 °C

R: CAATCCCTTTGTGATCTCAG

NR1H3-6

F: AGCAGTTTCCTCAGTTGAGC

Exon 8, exon 9 and exon 10

1029

56 °C

R: AGGGTCAGTACCGTCTTCAC